Cluster: Rep_2927_CGC18
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2927
- CGC Family ID: CGCFAM_00935
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2927_c_36 | Rep_2927_c_36_4 | 2841 | 3932 | - | GH170 |
| TC | Rep_2927_c_36 | Rep_2927_c_36_5 | 4001 | 5389 | - | 4.A.3.2.8 |
| TC | Rep_2927_c_36 | Rep_2927_c_36_6 | 5401 | 5730 | - | 4.A.3.2.1 |
| TC | Rep_2927_c_36 | Rep_2927_c_36_7 | 5752 | 6072 | - | 4.A.3.2.2 |
| TF | Rep_2927_c_36 | Rep_2927_c_36_8 | 6078 | 8162 | - | Mga |
| pfam | Rep_2927_c_36 | Rep_2927_c_36_9 | 8276 | 8857 | - | Flavoprotein |
| TC | Rep_2927_c_36 | Rep_2927_c_36_10 | 8867 | 9613 | - | 9.B.120.1.1 |
Gene ID: Rep_2927_c_36_4
Type: CAZyme
Location: 2841 - 3932 (-)
Type: CAZyme
Location: 2841 - 3932 (-)
Gene ID: Rep_2927_c_36_5
Type: TC
Location: 4001 - 5389 (-)
Type: TC
Location: 4001 - 5389 (-)
Gene ID: Rep_2927_c_36_6
Type: TC
Location: 5401 - 5730 (-)
Type: TC
Location: 5401 - 5730 (-)
Gene ID: Rep_2927_c_36_7
Type: TC
Location: 5752 - 6072 (-)
Type: TC
Location: 5752 - 6072 (-)
Gene ID: Rep_2927_c_36_8
Type: TF
Location: 6078 - 8162 (-)
Type: TF
Location: 6078 - 8162 (-)
Gene ID: Rep_2927_c_36_9
Type: pfam
Location: 8276 - 8857 (-)
Type: pfam
Location: 8276 - 8857 (-)
Gene ID: Rep_2927_c_36_10
Type: TC
Location: 8867 - 9613 (-)
Type: TC
Location: 8867 - 9613 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902470925
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.