Cluster: Rep_2927_CGC15
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2927
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2927_c_28 | Rep_2927_c_28_8 | 12839 | 14458 | + | 4.A.1.1.16 |
| CAZyme | Rep_2927_c_28 | Rep_2927_c_28_9 | 14519 | 15895 | + | GH4 |
| TC | Rep_2927_c_28 | Rep_2927_c_28_10 | 16369 | 19233 | + | 3.D.1.4.2 |
| TC | Rep_2927_c_28 | Rep_2927_c_28_11 | 19246 | 19761 | + | 3.D.1.4.2 |
| pfam | Rep_2927_c_28 | Rep_2927_c_28_12 | 19762 | 20544 | + | Complex1_30kDa |
| TC | Rep_2927_c_28 | Rep_2927_c_28_13 | 20547 | 21641 | + | 3.D.1.4.2 |
Gene ID: Rep_2927_c_28_8
Type: TC
Location: 12839 - 14458 (+)
Type: TC
Location: 12839 - 14458 (+)
Gene ID: Rep_2927_c_28_9
Type: CAZyme
Location: 14519 - 15895 (+)
Type: CAZyme
Location: 14519 - 15895 (+)
Gene ID: Rep_2927_c_28_10
Type: TC
Location: 16369 - 19233 (+)
Type: TC
Location: 16369 - 19233 (+)
Gene ID: Rep_2927_c_28_11
Type: TC
Location: 19246 - 19761 (+)
Type: TC
Location: 19246 - 19761 (+)
Gene ID: Rep_2927_c_28_12
Type: pfam
Location: 19762 - 20544 (+)
Type: pfam
Location: 19762 - 20544 (+)
Gene ID: Rep_2927_c_28_13
Type: TC
Location: 20547 - 21641 (+)
Type: TC
Location: 20547 - 21641 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902470925
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.