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Cluster: Rep_2927_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2927_c_23 Rep_2927_c_23_1 774 1934 - CE9
STP Rep_2927_c_23 Rep_2927_c_23_2 2100 3269 - SIS | SIS
TF Rep_2927_c_23 Rep_2927_c_23_3 3787 4518 - GntR
TC Rep_2927_c_23 Rep_2927_c_23_4 4648 5076 - 4.A.6.1.8
NULL(UNKNOWN) Rep_2927_c_23 Rep_2927_c_23_5 5436 6056 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2927_c_23 Rep_2927_c_23_6 6409 7248 - 4.A.6.1.18
TC Rep_2927_c_23 Rep_2927_c_23_7 7238 8122 - 4.A.6.1.18
TC Rep_2927_c_23 Rep_2927_c_23_8 8221 8685 - 4.A.6.1.18
CAZyme Rep_2927_c_23 Rep_2927_c_23_9 8687 10483 - GH35
CAZyme Rep_2927_c_23 Rep_2927_c_23_10 11172 15572 - CBM32 | CBM32 | GH20
Gene ID: Rep_2927_c_23_1
Type: CAZyme
Location: 774 - 1934 (-)
Gene ID: Rep_2927_c_23_2
Type: STP
Location: 2100 - 3269 (-)
Gene ID: Rep_2927_c_23_3
Type: TF
Location: 3787 - 4518 (-)
Gene ID: Rep_2927_c_23_4
Type: TC
Location: 4648 - 5076 (-)
Gene ID: Rep_2927_c_23_5
Type:
Location: 5436 - 6056 (-)
Gene ID: Rep_2927_c_23_6
Type: TC
Location: 6409 - 7248 (-)
Gene ID: Rep_2927_c_23_7
Type: TC
Location: 7238 - 8122 (-)
Gene ID: Rep_2927_c_23_8
Type: TC
Location: 8221 - 8685 (-)
Gene ID: Rep_2927_c_23_9
Type: CAZyme
Location: 8687 - 10483 (-)
Gene ID: Rep_2927_c_23_10
Type: CAZyme
Location: 11172 - 15572 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2927_c_23_6 vegetarian > vegan 1.67821 0.00364

🧭 Explore Read Mapping of CGC

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