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Cluster: Rep_2927_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2927_c_18 Rep_2927_c_18_1 3 791 - 3.A.1.5.20
TC Rep_2927_c_18 Rep_2927_c_18_2 795 1754 - 3.A.1.5.38
TC Rep_2927_c_18 Rep_2927_c_18_3 1887 3500 - 3.A.1.5.27
pfam Rep_2927_c_18 Rep_2927_c_18_4 4072 4533 - RDD
TC Rep_2927_c_18 Rep_2927_c_18_5 4548 6053 - 4.A.1.1.9
pfam Rep_2927_c_18 Rep_2927_c_18_6 6201 7067 - PRD | PRD | CAT_RBD
pfam Rep_2927_c_18 Rep_2927_c_18_7 7249 8103 - PRD | PRD | CAT_RBD
CAZyme Rep_2927_c_18 Rep_2927_c_18_8 8116 9591 - GH1
TC Rep_2927_c_18 Rep_2927_c_18_9 9594 11498 - 4.A.1.2.11
Gene ID: Rep_2927_c_18_1
Type: TC
Location: 3 - 791 (-)
Gene ID: Rep_2927_c_18_2
Type: TC
Location: 795 - 1754 (-)
Gene ID: Rep_2927_c_18_3
Type: TC
Location: 1887 - 3500 (-)
Gene ID: Rep_2927_c_18_4
Type: pfam
Location: 4072 - 4533 (-)
Gene ID: Rep_2927_c_18_5
Type: TC
Location: 4548 - 6053 (-)
Gene ID: Rep_2927_c_18_6
Type: pfam
Location: 6201 - 7067 (-)
Gene ID: Rep_2927_c_18_7
Type: pfam
Location: 7249 - 8103 (-)
Gene ID: Rep_2927_c_18_8
Type: CAZyme
Location: 8116 - 9591 (-)
Gene ID: Rep_2927_c_18_9
Type: TC
Location: 9594 - 11498 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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