Cluster: Rep_2926_CGC24
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_2926
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2926_c_27 | Rep_2926_c_27_47 | 56594 | 57679 | + | GH170 |
| CAZyme | Rep_2926_c_27 | Rep_2926_c_27_48 | 57882 | 59201 | + | GH4 |
| TC | Rep_2926_c_27 | Rep_2926_c_27_49 | 59367 | 59672 | + | 4.A.3.2.8 |
| TC | Rep_2926_c_27 | Rep_2926_c_27_50 | 59764 | 61188 | + | 4.A.3.2.4 |
| NULL(UNKNOWN) | Rep_2926_c_27 | Rep_2926_c_27_51 | 61325 | 61498 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2926_c_27 | Rep_2926_c_27_52 | 61503 | 62885 | + | GH1 |
Gene ID: Rep_2926_c_27_47
Type: CAZyme
Location: 56594 - 57679 (+)
Type: CAZyme
Location: 56594 - 57679 (+)
Gene ID: Rep_2926_c_27_48
Type: CAZyme
Location: 57882 - 59201 (+)
Type: CAZyme
Location: 57882 - 59201 (+)
Gene ID: Rep_2926_c_27_49
Type: TC
Location: 59367 - 59672 (+)
Type: TC
Location: 59367 - 59672 (+)
Gene ID: Rep_2926_c_27_50
Type: TC
Location: 59764 - 61188 (+)
Type: TC
Location: 59764 - 61188 (+)
Gene ID: Rep_2926_c_27_51
Type:
Location: 61325 - 61498 (+)
Type:
Location: 61325 - 61498 (+)
Gene ID: Rep_2926_c_27_52
Type: CAZyme
Location: 61503 - 62885 (+)
Type: CAZyme
Location: 61503 - 62885 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella stercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.