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Cluster: Rep_290_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_290_c_8 Rep_290_c_8_28 31165 31911 - 3.A.1.3.15
pfam Rep_290_c_8 Rep_290_c_8_29 31975 32565 - Colicin_V
CAZyme Rep_290_c_8 Rep_290_c_8_30 32618 33712 - GT4
CAZyme Rep_290_c_8 Rep_290_c_8_31 33709 34767 - GT2
NULL(UNKNOWN) Rep_290_c_8 Rep_290_c_8_32 34752 36155 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_290_c_8 Rep_290_c_8_33 36148 37821 - 8.A.3.3.4
pfam Rep_290_c_8 Rep_290_c_8_34 37891 38697 - Poly_export | SLBB_2
CAZyme Rep_290_c_8 Rep_290_c_8_35 38921 39691 - GH25
pfam Rep_290_c_8 Rep_290_c_8_36 39702 40190 - YgbB
TC Rep_290_c_8 Rep_290_c_8_37 40200 41423 - 1.B.57.4.6
Gene ID: Rep_290_c_8_28
Type: TC
Location: 31165 - 31911 (-)
Gene ID: Rep_290_c_8_29
Type: pfam
Location: 31975 - 32565 (-)
Gene ID: Rep_290_c_8_30
Type: CAZyme
Location: 32618 - 33712 (-)
Gene ID: Rep_290_c_8_31
Type: CAZyme
Location: 33709 - 34767 (-)
Gene ID: Rep_290_c_8_32
Type:
Location: 34752 - 36155 (-)
Gene ID: Rep_290_c_8_33
Type: TC
Location: 36148 - 37821 (-)
Gene ID: Rep_290_c_8_34
Type: pfam
Location: 37891 - 38697 (-)
Gene ID: Rep_290_c_8_35
Type: CAZyme
Location: 38921 - 39691 (-)
Gene ID: Rep_290_c_8_36
Type: pfam
Location: 39702 - 40190 (-)
Gene ID: Rep_290_c_8_37
Type: TC
Location: 40200 - 41423 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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