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Cluster: Rep_2905_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2905_c_8 Rep_2905_c_8_23 22840 24009 - CE9
STP Rep_2905_c_8 Rep_2905_c_8_24 24129 25295 - SIS | SIS
TF Rep_2905_c_8 Rep_2905_c_8_25 25410 26141 - GntR
TC Rep_2905_c_8 Rep_2905_c_8_26 26327 27409 - 4.A.6.1.4
TC Rep_2905_c_8 Rep_2905_c_8_27 27399 28199 - 4.A.6.1.4
TC Rep_2905_c_8 Rep_2905_c_8_28 28290 28772 - 4.A.6.1.4
pfam Rep_2905_c_8 Rep_2905_c_8_29 28809 29090 - YajC
TC Rep_2905_c_8 Rep_2905_c_8_30 29090 29533 - 4.A.6.1.16
Gene ID: Rep_2905_c_8_23
Type: CAZyme
Location: 22840 - 24009 (-)
Gene ID: Rep_2905_c_8_24
Type: STP
Location: 24129 - 25295 (-)
Gene ID: Rep_2905_c_8_25
Type: TF
Location: 25410 - 26141 (-)
Gene ID: Rep_2905_c_8_26
Type: TC
Location: 26327 - 27409 (-)
Gene ID: Rep_2905_c_8_27
Type: TC
Location: 27399 - 28199 (-)
Gene ID: Rep_2905_c_8_28
Type: TC
Location: 28290 - 28772 (-)
Gene ID: Rep_2905_c_8_29
Type: pfam
Location: 28809 - 29090 (-)
Gene ID: Rep_2905_c_8_30
Type: TC
Location: 29090 - 29533 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2905_c_8_29 vegan > omnivore 1.13395 0.00364

🧭 Explore Read Mapping of CGC

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