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Cluster: Rep_2905_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2905_c_8 Rep_2905_c_8_5 3893 4231 - 4.A.3.1.2
TF Rep_2905_c_8 Rep_2905_c_8_6 4446 5450 - LacI
NULL(UNKNOWN) Rep_2905_c_8 Rep_2905_c_8_7 5464 5757 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2905_c_8 Rep_2905_c_8_8 5807 7576 + 4.A.3.1.1
CAZyme Rep_2905_c_8 Rep_2905_c_8_9 7643 9082 + GH1
TF Rep_2905_c_8 Rep_2905_c_8_10 9427 10437 - LacI
TC Rep_2905_c_8 Rep_2905_c_8_11 10714 12501 + 4.A.3.1.1
CAZyme Rep_2905_c_8 Rep_2905_c_8_12 12577 13998 + GH1
Gene ID: Rep_2905_c_8_5
Type: TC
Location: 3893 - 4231 (-)
Gene ID: Rep_2905_c_8_6
Type: TF
Location: 4446 - 5450 (-)
Gene ID: Rep_2905_c_8_7
Type:
Location: 5464 - 5757 (+)
Gene ID: Rep_2905_c_8_8
Type: TC
Location: 5807 - 7576 (+)
Gene ID: Rep_2905_c_8_9
Type: CAZyme
Location: 7643 - 9082 (+)
Gene ID: Rep_2905_c_8_10
Type: TF
Location: 9427 - 10437 (-)
Gene ID: Rep_2905_c_8_11
Type: TC
Location: 10714 - 12501 (+)
Gene ID: Rep_2905_c_8_12
Type: CAZyme
Location: 12577 - 13998 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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