Cluster: Rep_2905_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2905
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2905_c_67 | Rep_2905_c_67_2 | 850 | 1413 | - | 4.A.1.2.6 |
| peptidase | Rep_2905_c_67 | Rep_2905_c_67_3 | 1658 | 2557 | + | S09.UPW |
| NULL(UNKNOWN) | Rep_2905_c_67 | Rep_2905_c_67_4 | 2605 | 2925 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2905_c_67 | Rep_2905_c_67_5 | 3047 | 5407 | + | 9.A.8.1.6 |
| TC | Rep_2905_c_67 | Rep_2905_c_67_6 | 5531 | 6727 | + | 2.A.1.2.18 |
| CAZyme | Rep_2905_c_67 | Rep_2905_c_67_7 | 6881 | 8257 | + | GH13_20 |
Gene ID: Rep_2905_c_67_2
Type: TC
Location: 850 - 1413 (-)
Type: TC
Location: 850 - 1413 (-)
Gene ID: Rep_2905_c_67_3
Type: peptidase
Location: 1658 - 2557 (+)
Type: peptidase
Location: 1658 - 2557 (+)
Gene ID: Rep_2905_c_67_4
Type:
Location: 2605 - 2925 (+)
Type:
Location: 2605 - 2925 (+)
Gene ID: Rep_2905_c_67_5
Type: TC
Location: 3047 - 5407 (+)
Type: TC
Location: 3047 - 5407 (+)
Gene ID: Rep_2905_c_67_6
Type: TC
Location: 5531 - 6727 (+)
Type: TC
Location: 5531 - 6727 (+)
Gene ID: Rep_2905_c_67_7
Type: CAZyme
Location: 6881 - 8257 (+)
Type: CAZyme
Location: 6881 - 8257 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902475445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.