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Cluster: Rep_2890_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2890_c_28 Rep_2890_c_28_12 13061 13399 - 4.A.3.1.2
TF Rep_2890_c_28 Rep_2890_c_28_13 13614 14618 - LacI
TC Rep_2890_c_28 Rep_2890_c_28_14 14975 16750 + 4.A.3.1.1
CAZyme Rep_2890_c_28 Rep_2890_c_28_15 16817 18256 + GH1
TF Rep_2890_c_28 Rep_2890_c_28_16 18442 19479 - LacI
CAZyme Rep_2890_c_28 Rep_2890_c_28_17 19821 21263 + GH1
TC Rep_2890_c_28 Rep_2890_c_28_18 21440 23200 + 4.A.3.1.1
TF Rep_2890_c_28 Rep_2890_c_28_19 23613 24623 - LacI
TC Rep_2890_c_28 Rep_2890_c_28_20 24900 26678 + 4.A.3.1.1
CAZyme Rep_2890_c_28 Rep_2890_c_28_21 26754 28175 + GH1
Gene ID: Rep_2890_c_28_12
Type: TC
Location: 13061 - 13399 (-)
Gene ID: Rep_2890_c_28_13
Type: TF
Location: 13614 - 14618 (-)
Gene ID: Rep_2890_c_28_14
Type: TC
Location: 14975 - 16750 (+)
Gene ID: Rep_2890_c_28_15
Type: CAZyme
Location: 16817 - 18256 (+)
Gene ID: Rep_2890_c_28_16
Type: TF
Location: 18442 - 19479 (-)
Gene ID: Rep_2890_c_28_17
Type: CAZyme
Location: 19821 - 21263 (+)
Gene ID: Rep_2890_c_28_18
Type: TC
Location: 21440 - 23200 (+)
Gene ID: Rep_2890_c_28_19
Type: TF
Location: 23613 - 24623 (-)
Gene ID: Rep_2890_c_28_20
Type: TC
Location: 24900 - 26678 (+)
Gene ID: Rep_2890_c_28_21
Type: CAZyme
Location: 26754 - 28175 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2890_c_28_16 vegetarian > omnivore 1.03142 0.02677

🧭 Explore Read Mapping of CGC

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