Cluster: Rep_2890_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2890
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2890_c_20 | Rep_2890_c_20_4 | 2901 | 3920 | + | GH109 |
| pfam | Rep_2890_c_20 | Rep_2890_c_20_5 | 4087 | 4953 | + | AP_endonuc_2 |
| TC | Rep_2890_c_20 | Rep_2890_c_20_6 | 5101 | 5961 | + | 3.A.1.3.15 |
| TC | Rep_2890_c_20 | Rep_2890_c_20_7 | 6079 | 7440 | + | 3.A.1.3.16 |
| TC | Rep_2890_c_20 | Rep_2890_c_20_8 | 7453 | 8205 | + | 3.A.1.3.20 |
Gene ID: Rep_2890_c_20_4
Type: CAZyme
Location: 2901 - 3920 (+)
Type: CAZyme
Location: 2901 - 3920 (+)
Gene ID: Rep_2890_c_20_5
Type: pfam
Location: 4087 - 4953 (+)
Type: pfam
Location: 4087 - 4953 (+)
Gene ID: Rep_2890_c_20_6
Type: TC
Location: 5101 - 5961 (+)
Type: TC
Location: 5101 - 5961 (+)
Gene ID: Rep_2890_c_20_7
Type: TC
Location: 6079 - 7440 (+)
Type: TC
Location: 6079 - 7440 (+)
Gene ID: Rep_2890_c_20_8
Type: TC
Location: 7453 - 8205 (+)
Type: TC
Location: 7453 - 8205 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900757465
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.