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Cluster: Rep_2890_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2890_c_17 Rep_2890_c_17_13 15719 18601 + 3.D.1.4.2
TC Rep_2890_c_17 Rep_2890_c_17_14 18614 19231 + 3.D.1.4.2
pfam Rep_2890_c_17 Rep_2890_c_17_15 19231 19944 + Complex1_30kDa
TC Rep_2890_c_17 Rep_2890_c_17_16 19950 21038 + 3.D.1.4.2
STP Rep_2890_c_17 Rep_2890_c_17_17 21046 21387 + Fer4
NULL(UNKNOWN) Rep_2890_c_17 Rep_2890_c_17_18 21583 21858 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2890_c_17 Rep_2890_c_17_19 22245 22934 + CBM32
CAZyme Rep_2890_c_17 Rep_2890_c_17_20 22959 27635 + GH36
Gene ID: Rep_2890_c_17_13
Type: TC
Location: 15719 - 18601 (+)
Gene ID: Rep_2890_c_17_14
Type: TC
Location: 18614 - 19231 (+)
Gene ID: Rep_2890_c_17_15
Type: pfam
Location: 19231 - 19944 (+)
Gene ID: Rep_2890_c_17_16
Type: TC
Location: 19950 - 21038 (+)
Gene ID: Rep_2890_c_17_17
Type: STP
Location: 21046 - 21387 (+)
Gene ID: Rep_2890_c_17_18
Type:
Location: 21583 - 21858 (-)
Gene ID: Rep_2890_c_17_19
Type: CAZyme
Location: 22245 - 22934 (+)
Gene ID: Rep_2890_c_17_20
Type: CAZyme
Location: 22959 - 27635 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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