Cluster: Rep_2890_CGC16
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2890
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2890_c_116 | Rep_2890_c_116_5 | 3722 | 4648 | - | CE7 |
| TC | Rep_2890_c_116 | Rep_2890_c_116_6 | 4780 | 5607 | - | 3.A.1.5.27 |
| TC | Rep_2890_c_116 | Rep_2890_c_116_7 | 5608 | 7623 | - | 3.A.1.5.25 |
| TC | Rep_2890_c_116 | Rep_2890_c_116_8 | 7627 | 8583 | - | 3.A.1.5.38 |
| TC | Rep_2890_c_116 | Rep_2890_c_116_9 | 8741 | 10351 | - | 3.A.1.5.27 |
| pfam | Rep_2890_c_116 | Rep_2890_c_116_10 | 10700 | 12655 | - | GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH |
| TC | Rep_2890_c_116 | Rep_2890_c_116_11 | 12662 | 14965 | - | 2.A.66.4.4 |
Gene ID: Rep_2890_c_116_5
Type: CAZyme
Location: 3722 - 4648 (-)
Type: CAZyme
Location: 3722 - 4648 (-)
Gene ID: Rep_2890_c_116_6
Type: TC
Location: 4780 - 5607 (-)
Type: TC
Location: 4780 - 5607 (-)
Gene ID: Rep_2890_c_116_7
Type: TC
Location: 5608 - 7623 (-)
Type: TC
Location: 5608 - 7623 (-)
Gene ID: Rep_2890_c_116_8
Type: TC
Location: 7627 - 8583 (-)
Type: TC
Location: 7627 - 8583 (-)
Gene ID: Rep_2890_c_116_9
Type: TC
Location: 8741 - 10351 (-)
Type: TC
Location: 8741 - 10351 (-)
Gene ID: Rep_2890_c_116_10
Type: pfam
Location: 10700 - 12655 (-)
Type: pfam
Location: 10700 - 12655 (-)
Gene ID: Rep_2890_c_116_11
Type: TC
Location: 12662 - 14965 (-)
Type: TC
Location: 12662 - 14965 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900757465
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.