Cluster: Rep_2890_CGC15
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2890
- CGC Family ID: CGCFAM_00182
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2890_c_98 | Rep_2890_c_98_3 | 1207 | 2424 | - | GT4 |
| pfam | Rep_2890_c_98 | Rep_2890_c_98_4 | 2439 | 3203 | - | BcrAD_BadFG |
| pfam | Rep_2890_c_98 | Rep_2890_c_98_5 | 3358 | 4521 | - | HGD-D |
| TC | Rep_2890_c_98 | Rep_2890_c_98_6 | 4598 | 5383 | - | 3.A.1.5.36 |
| TC | Rep_2890_c_98 | Rep_2890_c_98_7 | 5373 | 5747 | - | 3.A.1.5.20 |
Gene ID: Rep_2890_c_98_3
Type: CAZyme
Location: 1207 - 2424 (-)
Type: CAZyme
Location: 1207 - 2424 (-)
Gene ID: Rep_2890_c_98_4
Type: pfam
Location: 2439 - 3203 (-)
Type: pfam
Location: 2439 - 3203 (-)
Gene ID: Rep_2890_c_98_5
Type: pfam
Location: 3358 - 4521 (-)
Type: pfam
Location: 3358 - 4521 (-)
Gene ID: Rep_2890_c_98_6
Type: TC
Location: 4598 - 5383 (-)
Type: TC
Location: 4598 - 5383 (-)
Gene ID: Rep_2890_c_98_7
Type: TC
Location: 5373 - 5747 (-)
Type: TC
Location: 5373 - 5747 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900757465
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2890_c_98_3 | vegan > omnivore | 1.70710 | 0.01061 |
| Rep_2890_c_98_6 | vegan > omnivore | 2.92399 | 0.01061 |
| Rep_2890_c_98_6 | vegetarian > omnivore | 1.07579 | 0.02677 |
| Rep_2890_c_98_7 | vegan > omnivore | 2.35098 | 0.01061 |