Cluster: Rep_2890_CGC14
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2890
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2890_c_93 | Rep_2890_c_93_22 | 24687 | 25175 | + | 4.A.6.1.9 |
| TC | Rep_2890_c_93 | Rep_2890_c_93_23 | 25248 | 26105 | + | 4.A.6.1.1 |
| TC | Rep_2890_c_93 | Rep_2890_c_93_24 | 26105 | 26932 | + | 4.A.6.1.6 |
| NULL(UNKNOWN) | Rep_2890_c_93 | Rep_2890_c_93_25 | 27128 | 27454 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_2890_c_93 | Rep_2890_c_93_26 | 27559 | 27999 | + | MarR |
| CAZyme | Rep_2890_c_93 | Rep_2890_c_93_27 | 28514 | 34927 | + | GH31_18 |
Gene ID: Rep_2890_c_93_22
Type: TC
Location: 24687 - 25175 (+)
Type: TC
Location: 24687 - 25175 (+)
Gene ID: Rep_2890_c_93_23
Type: TC
Location: 25248 - 26105 (+)
Type: TC
Location: 25248 - 26105 (+)
Gene ID: Rep_2890_c_93_24
Type: TC
Location: 26105 - 26932 (+)
Type: TC
Location: 26105 - 26932 (+)
Gene ID: Rep_2890_c_93_25
Type:
Location: 27128 - 27454 (+)
Type:
Location: 27128 - 27454 (+)
Gene ID: Rep_2890_c_93_26
Type: TF
Location: 27559 - 27999 (+)
Type: TF
Location: 27559 - 27999 (+)
Gene ID: Rep_2890_c_93_27
Type: CAZyme
Location: 28514 - 34927 (+)
Type: CAZyme
Location: 28514 - 34927 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900757465
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2890_c_93_27 | vegetarian > omnivore | 1.23854 | 0.02677 |
| Rep_2890_c_93_27 | vegetarian > vegan | 2.01004 | 0.01144 |