Cluster: Rep_2890_CGC12
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2890
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2890_c_88 | Rep_2890_c_88_4 | 5035 | 6483 | - | 4.A.1.2.6 |
| CAZyme | Rep_2890_c_88 | Rep_2890_c_88_5 | 6515 | 7945 | - | GH1 |
| TC | Rep_2890_c_88 | Rep_2890_c_88_6 | 8068 | 9048 | - | 2.A.7.3.62 |
Gene ID: Rep_2890_c_88_4
Type: TC
Location: 5035 - 6483 (-)
Type: TC
Location: 5035 - 6483 (-)
Gene ID: Rep_2890_c_88_5
Type: CAZyme
Location: 6515 - 7945 (-)
Type: CAZyme
Location: 6515 - 7945 (-)
Gene ID: Rep_2890_c_88_6
Type: TC
Location: 8068 - 9048 (-)
Type: TC
Location: 8068 - 9048 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900757465
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2890_c_88_4 | vegan > omnivore | 1.34248 | 0.01061 |
| Rep_2890_c_88_5 | vegan > omnivore | 1.06597 | 0.01061 |