dbCAN Logo

Cluster: Rep_2890_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2890_c_82 Rep_2890_c_82_10 8946 10451 + GH77
CAZyme Rep_2890_c_82 Rep_2890_c_82_11 10580 12847 + GT35
TC Rep_2890_c_82 Rep_2890_c_82_12 13305 14504 - 3.A.1.1.22
TC Rep_2890_c_82 Rep_2890_c_82_13 14573 15412 - 3.A.1.1.45
TC Rep_2890_c_82 Rep_2890_c_82_14 15412 16266 - 3.A.1.1.45
TC Rep_2890_c_82 Rep_2890_c_82_15 16355 17671 - 3.A.1.1.45
TF Rep_2890_c_82 Rep_2890_c_82_16 17978 18697 - GntR
NULL(UNKNOWN) Rep_2890_c_82 Rep_2890_c_82_17 18781 18900 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2890_c_82 Rep_2890_c_82_18 18922 21375 + 4.A.1.1.8
Gene ID: Rep_2890_c_82_10
Type: CAZyme
Location: 8946 - 10451 (+)
Gene ID: Rep_2890_c_82_11
Type: CAZyme
Location: 10580 - 12847 (+)
Gene ID: Rep_2890_c_82_12
Type: TC
Location: 13305 - 14504 (-)
Gene ID: Rep_2890_c_82_13
Type: TC
Location: 14573 - 15412 (-)
Gene ID: Rep_2890_c_82_14
Type: TC
Location: 15412 - 16266 (-)
Gene ID: Rep_2890_c_82_15
Type: TC
Location: 16355 - 17671 (-)
Gene ID: Rep_2890_c_82_16
Type: TF
Location: 17978 - 18697 (-)
Gene ID: Rep_2890_c_82_17
Type:
Location: 18781 - 18900 (-)
Gene ID: Rep_2890_c_82_18
Type: TC
Location: 18922 - 21375 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List