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Cluster: Rep_287_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_287_c_30 Rep_287_c_30_10 16425 17735 - 9.A.40.1.2
pfam Rep_287_c_30 Rep_287_c_30_11 17870 18667 - Glycos_transf_2
NULL(UNKNOWN) Rep_287_c_30 Rep_287_c_30_12 18667 19776 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_287_c_30 Rep_287_c_30_13 19845 20783 + GT2
pfam Rep_287_c_30 Rep_287_c_30_14 20928 22079 - GldN
pfam Rep_287_c_30 Rep_287_c_30_15 22113 23480 - GldM_4th | GldM_1st | GldM_3rd
TC Rep_287_c_30 Rep_287_c_30_16 23487 24449 - 9.A.25.1.1
TC Rep_287_c_30 Rep_287_c_30_17 24522 26000 - 9.A.25.1.1
pfam Rep_287_c_30 Rep_287_c_30_18 26068 27063 - PorP_SprF
TC Rep_287_c_30 Rep_287_c_30_19 27074 27778 - 1.B.44.1.1
Gene ID: Rep_287_c_30_10
Type: TC
Location: 16425 - 17735 (-)
Gene ID: Rep_287_c_30_11
Type: pfam
Location: 17870 - 18667 (-)
Gene ID: Rep_287_c_30_12
Type:
Location: 18667 - 19776 (-)
Gene ID: Rep_287_c_30_13
Type: CAZyme
Location: 19845 - 20783 (+)
Gene ID: Rep_287_c_30_14
Type: pfam
Location: 20928 - 22079 (-)
Gene ID: Rep_287_c_30_15
Type: pfam
Location: 22113 - 23480 (-)
Gene ID: Rep_287_c_30_16
Type: TC
Location: 23487 - 24449 (-)
Gene ID: Rep_287_c_30_17
Type: TC
Location: 24522 - 26000 (-)
Gene ID: Rep_287_c_30_18
Type: pfam
Location: 26068 - 27063 (-)
Gene ID: Rep_287_c_30_19
Type: TC
Location: 27074 - 27778 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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