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Cluster: Rep_2878_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2878_c_12 Rep_2878_c_12_6 6756 7586 - 3.A.1.132.3
pfam Rep_2878_c_12 Rep_2878_c_12_7 7846 10725 + UvrA_DNA-bind | UvrA_inter
pfam Rep_2878_c_12 Rep_2878_c_12_8 10859 11359 + tRNA_edit
TC Rep_2878_c_12 Rep_2878_c_12_9 11363 13666 + 2.A.66.4.4
pfam Rep_2878_c_12 Rep_2878_c_12_10 13673 15613 + GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC Rep_2878_c_12 Rep_2878_c_12_11 15979 17592 + 3.A.1.5.27
TC Rep_2878_c_12 Rep_2878_c_12_12 17748 18704 + 3.A.1.5.38
TC Rep_2878_c_12 Rep_2878_c_12_13 18708 20723 + 3.A.1.5.25
TC Rep_2878_c_12 Rep_2878_c_12_14 20724 21551 + 3.A.1.5.27
CAZyme Rep_2878_c_12 Rep_2878_c_12_15 21683 22609 + CE7
Gene ID: Rep_2878_c_12_6
Type: TC
Location: 6756 - 7586 (-)
Gene ID: Rep_2878_c_12_7
Type: pfam
Location: 7846 - 10725 (+)
Gene ID: Rep_2878_c_12_8
Type: pfam
Location: 10859 - 11359 (+)
Gene ID: Rep_2878_c_12_9
Type: TC
Location: 11363 - 13666 (+)
Gene ID: Rep_2878_c_12_10
Type: pfam
Location: 13673 - 15613 (+)
Gene ID: Rep_2878_c_12_11
Type: TC
Location: 15979 - 17592 (+)
Gene ID: Rep_2878_c_12_12
Type: TC
Location: 17748 - 18704 (+)
Gene ID: Rep_2878_c_12_13
Type: TC
Location: 18708 - 20723 (+)
Gene ID: Rep_2878_c_12_14
Type: TC
Location: 20724 - 21551 (+)
Gene ID: Rep_2878_c_12_15
Type: CAZyme
Location: 21683 - 22609 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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