Cluster: Rep_2878_CGC3
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2878
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2878_c_4 | Rep_2878_c_4_7 | 5499 | 6716 | - | GT4 |
| pfam | Rep_2878_c_4 | Rep_2878_c_4_8 | 6731 | 7495 | - | BcrAD_BadFG |
| pfam | Rep_2878_c_4 | Rep_2878_c_4_9 | 7651 | 8814 | - | HGD-D |
| TC | Rep_2878_c_4 | Rep_2878_c_4_10 | 8891 | 9676 | - | 3.A.1.5.36 |
| TC | Rep_2878_c_4 | Rep_2878_c_4_11 | 9666 | 10661 | - | 3.A.1.5.35 |
| TC | Rep_2878_c_4 | Rep_2878_c_4_12 | 10665 | 11495 | - | 3.A.1.5.39 |
| TC | Rep_2878_c_4 | Rep_2878_c_4_13 | 11492 | 12445 | - | 3.A.1.5.39 |
| TC | Rep_2878_c_4 | Rep_2878_c_4_14 | 12534 | 14144 | - | 3.A.1.5.11 |
| pfam | Rep_2878_c_4 | Rep_2878_c_4_15 | 14329 | 15612 | - | HGD-D |
| TC | Rep_2878_c_4 | Rep_2878_c_4_16 | 16042 | 17112 | - | 3.A.1.1.3 |
| TC | Rep_2878_c_4 | Rep_2878_c_4_17 | 17116 | 18558 | - | 3.A.1.8.1 |
Gene ID: Rep_2878_c_4_7
Type: CAZyme
Location: 5499 - 6716 (-)
Type: CAZyme
Location: 5499 - 6716 (-)
Gene ID: Rep_2878_c_4_8
Type: pfam
Location: 6731 - 7495 (-)
Type: pfam
Location: 6731 - 7495 (-)
Gene ID: Rep_2878_c_4_9
Type: pfam
Location: 7651 - 8814 (-)
Type: pfam
Location: 7651 - 8814 (-)
Gene ID: Rep_2878_c_4_10
Type: TC
Location: 8891 - 9676 (-)
Type: TC
Location: 8891 - 9676 (-)
Gene ID: Rep_2878_c_4_11
Type: TC
Location: 9666 - 10661 (-)
Type: TC
Location: 9666 - 10661 (-)
Gene ID: Rep_2878_c_4_12
Type: TC
Location: 10665 - 11495 (-)
Type: TC
Location: 10665 - 11495 (-)
Gene ID: Rep_2878_c_4_13
Type: TC
Location: 11492 - 12445 (-)
Type: TC
Location: 11492 - 12445 (-)
Gene ID: Rep_2878_c_4_14
Type: TC
Location: 12534 - 14144 (-)
Type: TC
Location: 12534 - 14144 (-)
Gene ID: Rep_2878_c_4_15
Type: pfam
Location: 14329 - 15612 (-)
Type: pfam
Location: 14329 - 15612 (-)
Gene ID: Rep_2878_c_4_16
Type: TC
Location: 16042 - 17112 (-)
Type: TC
Location: 16042 - 17112 (-)
Gene ID: Rep_2878_c_4_17
Type: TC
Location: 17116 - 18558 (-)
Type: TC
Location: 17116 - 18558 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp905210085
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2878_c_4_7 | vegan > omnivore | 1.52092 | 0.01144 |
| Rep_2878_c_4_10 | vegan > omnivore | 2.71088 | 0.01144 |
| Rep_2878_c_4_11 | vegan > omnivore | 1.35751 | 0.01144 |
| Rep_2878_c_4_12 | vegan > omnivore | 2.77203 | 0.01144 |
| Rep_2878_c_4_12 | vegetarian > omnivore | 1.23327 | 0.04785 |
| Rep_2878_c_4_13 | vegan > omnivore | 2.64529 | 0.01144 |
| Rep_2878_c_4_13 | vegetarian > omnivore | 1.17275 | 0.04785 |
| Rep_2878_c_4_14 | vegan > omnivore | 3.15587 | 0.01144 |