Cluster: Rep_2878_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2878
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2878_c_0 | Rep_2878_c_0_48 | 54852 | 56258 | + | CE4 |
| NULL(UNKNOWN) | Rep_2878_c_0 | Rep_2878_c_0_49 | 56334 | 56594 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | Rep_2878_c_0 | Rep_2878_c_0_50 | 56620 | 58476 | + | CBS | CBS |
| TC | Rep_2878_c_0 | Rep_2878_c_0_51 | 58485 | 59747 | + | 2.A.55.3.6 |
| TC | Rep_2878_c_0 | Rep_2878_c_0_52 | 60284 | 62500 | - | 9.B.97.5.1 |
Gene ID: Rep_2878_c_0_48
Type: CAZyme
Location: 54852 - 56258 (+)
Type: CAZyme
Location: 54852 - 56258 (+)
Gene ID: Rep_2878_c_0_49
Type:
Location: 56334 - 56594 (-)
Type:
Location: 56334 - 56594 (-)
Gene ID: Rep_2878_c_0_50
Type: STP
Location: 56620 - 58476 (+)
Type: STP
Location: 56620 - 58476 (+)
Gene ID: Rep_2878_c_0_51
Type: TC
Location: 58485 - 59747 (+)
Type: TC
Location: 58485 - 59747 (+)
Gene ID: Rep_2878_c_0_52
Type: TC
Location: 60284 - 62500 (-)
Type: TC
Location: 60284 - 62500 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp905210085
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.