Cluster: Rep_2875_CGC3
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2875
- CGC Family ID: CGCFAM_04503
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2875_c_0 | Rep_2875_c_0_385 | 474472 | 474732 | + | 4.A.3.2.7 |
| TC | Rep_2875_c_0 | Rep_2875_c_0_386 | 474779 | 475072 | + | 4.A.3.2.6 |
| TC | Rep_2875_c_0 | Rep_2875_c_0_387 | 475082 | 476149 | + | 4.A.3.2.6 |
| pfam | Rep_2875_c_0 | Rep_2875_c_0_388 | 476337 | 477449 | - | DEDD_Tnp_IS110 | Transposase_20 |
| TC | Rep_2875_c_0 | Rep_2875_c_0_389 | 477577 | 477990 | + | 4.A.3.2.3 |
| CAZyme | Rep_2875_c_0 | Rep_2875_c_0_390 | 477992 | 479446 | + | GH1 |
| pfam | Rep_2875_c_0 | Rep_2875_c_0_391 | 479900 | 480280 | - | Peptidase_C70 | Peptidase_C39_2 |
| NULL(UNKNOWN) | Rep_2875_c_0 | Rep_2875_c_0_392 | 480264 | 481031 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2875_c_0 | Rep_2875_c_0_393 | 481229 | 482707 | - | 2.A.118.1.1 |
| pfam | Rep_2875_c_0 | Rep_2875_c_0_394 | 483139 | 484146 | - | 2-Hacid_dh | 2-Hacid_dh_C |
| pfam | Rep_2875_c_0 | Rep_2875_c_0_395 | 484268 | 485125 | - | ADI | ADI | DDAH_eukar |
| TC | Rep_2875_c_0 | Rep_2875_c_0_396 | 485238 | 486755 | - | 2.A.118.1.6 |
Gene ID: Rep_2875_c_0_385
Type: TC
Location: 474472 - 474732 (+)
Type: TC
Location: 474472 - 474732 (+)
Gene ID: Rep_2875_c_0_386
Type: TC
Location: 474779 - 475072 (+)
Type: TC
Location: 474779 - 475072 (+)
Gene ID: Rep_2875_c_0_387
Type: TC
Location: 475082 - 476149 (+)
Type: TC
Location: 475082 - 476149 (+)
Gene ID: Rep_2875_c_0_388
Type: pfam
Location: 476337 - 477449 (-)
Type: pfam
Location: 476337 - 477449 (-)
Gene ID: Rep_2875_c_0_389
Type: TC
Location: 477577 - 477990 (+)
Type: TC
Location: 477577 - 477990 (+)
Gene ID: Rep_2875_c_0_390
Type: CAZyme
Location: 477992 - 479446 (+)
Type: CAZyme
Location: 477992 - 479446 (+)
Gene ID: Rep_2875_c_0_391
Type: pfam
Location: 479900 - 480280 (-)
Type: pfam
Location: 479900 - 480280 (-)
Gene ID: Rep_2875_c_0_392
Type:
Location: 480264 - 481031 (-)
Type:
Location: 480264 - 481031 (-)
Gene ID: Rep_2875_c_0_393
Type: TC
Location: 481229 - 482707 (-)
Type: TC
Location: 481229 - 482707 (-)
Gene ID: Rep_2875_c_0_394
Type: pfam
Location: 483139 - 484146 (-)
Type: pfam
Location: 483139 - 484146 (-)
Gene ID: Rep_2875_c_0_395
Type: pfam
Location: 484268 - 485125 (-)
Type: pfam
Location: 484268 - 485125 (-)
Gene ID: Rep_2875_c_0_396
Type: TC
Location: 485238 - 486755 (-)
Type: TC
Location: 485238 - 486755 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902495355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2875_c_0_385 | vegetarian > vegan | 1.20051 | 0.04153 |
| Rep_2875_c_0_386 | vegetarian > vegan | 2.07564 | 0.03928 |
| Rep_2875_c_0_387 | vegetarian > vegan | 2.45647 | 0.03957 |
| Rep_2875_c_0_388 | vegan > omnivore | 2.02791 | 0.01057 |
| Rep_2875_c_0_388 | vegetarian > omnivore | 1.30534 | 0.01867 |
| Rep_2875_c_0_389 | vegetarian > vegan | 1.62332 | 0.03957 |
| Rep_2875_c_0_390 | vegetarian > vegan | 2.14367 | 0.02101 |