dbCAN Logo

Cluster: Rep_2875_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2875_c_0 Rep_2875_c_0_2024 2269003 2270172 - CE9
STP Rep_2875_c_0 Rep_2875_c_0_2025 2270290 2271456 - SIS | SIS
TF Rep_2875_c_0 Rep_2875_c_0_2026 2271571 2272302 - GntR
TC Rep_2875_c_0 Rep_2875_c_0_2027 2272487 2273569 - 4.A.6.1.4
TC Rep_2875_c_0 Rep_2875_c_0_2028 2273559 2274359 - 4.A.6.1.4
TC Rep_2875_c_0 Rep_2875_c_0_2029 2274450 2274932 - 4.A.6.1.4
pfam Rep_2875_c_0 Rep_2875_c_0_2030 2274969 2275250 - YajC
TC Rep_2875_c_0 Rep_2875_c_0_2031 2275250 2275693 - 4.A.6.1.16
Gene ID: Rep_2875_c_0_2024
Type: CAZyme
Location: 2269003 - 2270172 (-)
Gene ID: Rep_2875_c_0_2025
Type: STP
Location: 2270290 - 2271456 (-)
Gene ID: Rep_2875_c_0_2026
Type: TF
Location: 2271571 - 2272302 (-)
Gene ID: Rep_2875_c_0_2027
Type: TC
Location: 2272487 - 2273569 (-)
Gene ID: Rep_2875_c_0_2028
Type: TC
Location: 2273559 - 2274359 (-)
Gene ID: Rep_2875_c_0_2029
Type: TC
Location: 2274450 - 2274932 (-)
Gene ID: Rep_2875_c_0_2030
Type: pfam
Location: 2274969 - 2275250 (-)
Gene ID: Rep_2875_c_0_2031
Type: TC
Location: 2275250 - 2275693 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2875_c_0_2030 vegan > omnivore 1.01364 0.01057

🧭 Explore Read Mapping of CGC

← Back to Cluster List