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Cluster: Rep_2875_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2875_c_0 Rep_2875_c_0_1985 2226178 2226516 - 4.A.3.1.2
TF Rep_2875_c_0 Rep_2875_c_0_1986 2226731 2227765 - LacI
TC Rep_2875_c_0 Rep_2875_c_0_1987 2228089 2229867 + 4.A.3.1.1
CAZyme Rep_2875_c_0 Rep_2875_c_0_1988 2229934 2231373 + GH1
TF Rep_2875_c_0 Rep_2875_c_0_1989 2231635 2232672 - LacI
CAZyme Rep_2875_c_0 Rep_2875_c_0_1990 2233014 2234456 + GH1
TC Rep_2875_c_0 Rep_2875_c_0_1991 2234633 2235745 + 4.A.3.1.1
TC Rep_2875_c_0 Rep_2875_c_0_1992 2235714 2236394 + 4.A.3.1.1
TF Rep_2875_c_0 Rep_2875_c_0_1993 2236806 2237816 - LacI
TC Rep_2875_c_0 Rep_2875_c_0_1994 2238092 2239849 + 4.A.3.1.1
CAZyme Rep_2875_c_0 Rep_2875_c_0_1995 2239925 2241346 + GH1
Gene ID: Rep_2875_c_0_1985
Type: TC
Location: 2226178 - 2226516 (-)
Gene ID: Rep_2875_c_0_1986
Type: TF
Location: 2226731 - 2227765 (-)
Gene ID: Rep_2875_c_0_1987
Type: TC
Location: 2228089 - 2229867 (+)
Gene ID: Rep_2875_c_0_1988
Type: CAZyme
Location: 2229934 - 2231373 (+)
Gene ID: Rep_2875_c_0_1989
Type: TF
Location: 2231635 - 2232672 (-)
Gene ID: Rep_2875_c_0_1990
Type: CAZyme
Location: 2233014 - 2234456 (+)
Gene ID: Rep_2875_c_0_1991
Type: TC
Location: 2234633 - 2235745 (+)
Gene ID: Rep_2875_c_0_1992
Type: TC
Location: 2235714 - 2236394 (+)
Gene ID: Rep_2875_c_0_1993
Type: TF
Location: 2236806 - 2237816 (-)
Gene ID: Rep_2875_c_0_1994
Type: TC
Location: 2238092 - 2239849 (+)
Gene ID: Rep_2875_c_0_1995
Type: CAZyme
Location: 2239925 - 2241346 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2875_c_0_1989 vegetarian > omnivore 1.06989 0.01867
Rep_2875_c_0_1992 vegetarian > omnivore 1.06586 0.01867

🧭 Explore Read Mapping of CGC

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