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Cluster: Rep_2875_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2875_c_0 Rep_2875_c_0_1290 1477511 1478272 + 9.B.18.1.2
pfam Rep_2875_c_0 Rep_2875_c_0_1291 1478333 1478740 + Alg14
pfam Rep_2875_c_0 Rep_2875_c_0_1292 1478752 1479237 + Glyco_tran_28_C
CAZyme Rep_2875_c_0 Rep_2875_c_0_1293 1479242 1479985 + GT32
CAZyme Rep_2875_c_0 Rep_2875_c_0_1294 1479985 1480881 + GT2
NULL(UNKNOWN) Rep_2875_c_0 Rep_2875_c_0_1295 1480878 1482020 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_2875_c_0 Rep_2875_c_0_1296 1482096 1483178 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2875_c_0 Rep_2875_c_0_1297 1483168 1484637 + 2.A.66.2.2
Gene ID: Rep_2875_c_0_1290
Type: TC
Location: 1477511 - 1478272 (+)
Gene ID: Rep_2875_c_0_1291
Type: pfam
Location: 1478333 - 1478740 (+)
Gene ID: Rep_2875_c_0_1292
Type: pfam
Location: 1478752 - 1479237 (+)
Gene ID: Rep_2875_c_0_1293
Type: CAZyme
Location: 1479242 - 1479985 (+)
Gene ID: Rep_2875_c_0_1294
Type: CAZyme
Location: 1479985 - 1480881 (+)
Gene ID: Rep_2875_c_0_1295
Type:
Location: 1480878 - 1482020 (+)
Gene ID: Rep_2875_c_0_1296
Type:
Location: 1482096 - 1483178 (+)
Gene ID: Rep_2875_c_0_1297
Type: TC
Location: 1483168 - 1484637 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2875_c_0_1291 vegan > omnivore 1.00604 0.01057

🧭 Explore Read Mapping of CGC

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