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Cluster: Rep_2875_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2875_c_0 Rep_2875_c_0_52 42932 44437 + GH77
CAZyme Rep_2875_c_0 Rep_2875_c_0_53 44566 46833 + GT35
TC Rep_2875_c_0 Rep_2875_c_0_54 47290 48489 - 3.A.1.1.22
TC Rep_2875_c_0 Rep_2875_c_0_55 48558 49397 - 3.A.1.1.45
TC Rep_2875_c_0 Rep_2875_c_0_56 49397 50251 - 3.A.1.1.45
TC Rep_2875_c_0 Rep_2875_c_0_57 50339 51655 - 3.A.1.1.45
TF Rep_2875_c_0 Rep_2875_c_0_58 51962 52681 - GntR
TC Rep_2875_c_0 Rep_2875_c_0_59 52911 54884 + 4.A.1.1.8
Gene ID: Rep_2875_c_0_52
Type: CAZyme
Location: 42932 - 44437 (+)
Gene ID: Rep_2875_c_0_53
Type: CAZyme
Location: 44566 - 46833 (+)
Gene ID: Rep_2875_c_0_54
Type: TC
Location: 47290 - 48489 (-)
Gene ID: Rep_2875_c_0_55
Type: TC
Location: 48558 - 49397 (-)
Gene ID: Rep_2875_c_0_56
Type: TC
Location: 49397 - 50251 (-)
Gene ID: Rep_2875_c_0_57
Type: TC
Location: 50339 - 51655 (-)
Gene ID: Rep_2875_c_0_58
Type: TF
Location: 51962 - 52681 (-)
Gene ID: Rep_2875_c_0_59
Type: TC
Location: 52911 - 54884 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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