Cluster: Rep_2873_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_2873
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2873_c_11 | Rep_2873_c_11_1 | 339 | 1898 | + | 2.A.2.5.1 |
| CAZyme | Rep_2873_c_11 | Rep_2873_c_11_2 | 2014 | 3609 | + | GH28 |
| CAZyme | Rep_2873_c_11 | Rep_2873_c_11_3 | 3744 | 5909 | + | CE19 | CE8 |
| pfam | Rep_2873_c_11 | Rep_2873_c_11_4 | 5979 | 6647 | + | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | Rep_2873_c_11 | Rep_2873_c_11_5 | 6755 | 7993 | + | GH105 |
Gene ID: Rep_2873_c_11_1
Type: TC
Location: 339 - 1898 (+)
Type: TC
Location: 339 - 1898 (+)
Gene ID: Rep_2873_c_11_2
Type: CAZyme
Location: 2014 - 3609 (+)
Type: CAZyme
Location: 2014 - 3609 (+)
Gene ID: Rep_2873_c_11_3
Type: CAZyme
Location: 3744 - 5909 (+)
Type: CAZyme
Location: 3744 - 5909 (+)
Gene ID: Rep_2873_c_11_4
Type: pfam
Location: 5979 - 6647 (+)
Type: pfam
Location: 5979 - 6647 (+)
Gene ID: Rep_2873_c_11_5
Type: CAZyme
Location: 6755 - 7993 (+)
Type: CAZyme
Location: 6755 - 7993 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900754445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2873_c_11_5 | vegan > omnivore | 1.00711 | 0.01560 |