dbCAN HGM

Cluster: Rep_2873_CGC1

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	Rep_2873_c_3	Rep_2873_c_3_11	10371	12065	+	4.A.3.1.1
STP	Rep_2873_c_3	Rep_2873_c_3_12	12228	12569	+	DeoRC
pfam	Rep_2873_c_3	Rep_2873_c_3_13	12607	13839	-	Fic
CAZyme	Rep_2873_c_3	Rep_2873_c_3_14	14208	15629	-	GH1
TC	Rep_2873_c_3	Rep_2873_c_3_15	15706	17484	-	4.A.3.1.1
TF	Rep_2873_c_3	Rep_2873_c_3_16	17760	18770	+	LacI
TC	Rep_2873_c_3	Rep_2873_c_3_17	19028	19222	-	4.A.3.1.1

Gene ID: Rep_2873_c_3_11
Type: TC
Location: 10371 - 12065 (+)

Gene ID: Rep_2873_c_3_12
Type: STP
Location: 12228 - 12569 (+)

Gene ID: Rep_2873_c_3_13
Type: pfam
Location: 12607 - 13839 (-)

Gene ID: Rep_2873_c_3_14
Type: CAZyme
Location: 14208 - 15629 (-)

Gene ID: Rep_2873_c_3_15
Type: TC
Location: 15706 - 17484 (-)

Gene ID: Rep_2873_c_3_16
Type: TF
Location: 17760 - 18770 (+)

Gene ID: Rep_2873_c_3_17
Type: TC
Location: 19028 - 19222 (-)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
Rep_2873_c_3_12	vegetarian > omnivore	1.26132	0.02386
Rep_2873_c_3_13	vegetarian > omnivore	1.01085	0.02386
Rep_2873_c_3_17	vegan > omnivore	1.22777	0.01560
Rep_2873_c_3_17	vegetarian > omnivore	1.47207	0.02386