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Cluster: Rep_2871_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2871_c_12 Rep_2871_c_12_9 13458 14834 - GH13_20
TC Rep_2871_c_12 Rep_2871_c_12_10 14988 16184 - 2.A.1.2.18
TC Rep_2871_c_12 Rep_2871_c_12_11 16306 18666 - 9.A.8.1.6
peptidase Rep_2871_c_12 Rep_2871_c_12_12 19140 20039 - S09.UPW
TC Rep_2871_c_12 Rep_2871_c_12_13 20283 20846 + 4.A.1.2.6
pfam Rep_2871_c_12 Rep_2871_c_12_14 21028 22431 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) Rep_2871_c_12 Rep_2871_c_12_15 22690 23475 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2871_c_12 Rep_2871_c_12_16 23636 24616 + 3.A.1.34.1
TC Rep_2871_c_12 Rep_2871_c_12_17 24821 25744 + 3.A.1.34.1
TC Rep_2871_c_12 Rep_2871_c_12_18 25737 26531 + 3.A.1.34.1
Gene ID: Rep_2871_c_12_9
Type: CAZyme
Location: 13458 - 14834 (-)
Gene ID: Rep_2871_c_12_10
Type: TC
Location: 14988 - 16184 (-)
Gene ID: Rep_2871_c_12_11
Type: TC
Location: 16306 - 18666 (-)
Gene ID: Rep_2871_c_12_12
Type: peptidase
Location: 19140 - 20039 (-)
Gene ID: Rep_2871_c_12_13
Type: TC
Location: 20283 - 20846 (+)
Gene ID: Rep_2871_c_12_14
Type: pfam
Location: 21028 - 22431 (+)
Gene ID: Rep_2871_c_12_15
Type:
Location: 22690 - 23475 (+)
Gene ID: Rep_2871_c_12_16
Type: TC
Location: 23636 - 24616 (+)
Gene ID: Rep_2871_c_12_17
Type: TC
Location: 24821 - 25744 (+)
Gene ID: Rep_2871_c_12_18
Type: TC
Location: 25737 - 26531 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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