Cluster: Rep_2871_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_2871
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2871_c_0 | Rep_2871_c_0_11 | 15308 | 17188 | + | GT2 |
| pfam | Rep_2871_c_0 | Rep_2871_c_0_12 | 17288 | 18475 | + | LicD |
| CAZyme | Rep_2871_c_0 | Rep_2871_c_0_13 | 18508 | 20349 | + | GT2 |
| CAZyme | Rep_2871_c_0 | Rep_2871_c_0_14 | 20381 | 21310 | - | GT81 |
| TC | Rep_2871_c_0 | Rep_2871_c_0_15 | 21472 | 22317 | + | 3.A.1.103.6 |
| TC | Rep_2871_c_0 | Rep_2871_c_0_16 | 22330 | 23097 | + | 3.A.1.103.1 |
Gene ID: Rep_2871_c_0_11
Type: CAZyme
Location: 15308 - 17188 (+)
Type: CAZyme
Location: 15308 - 17188 (+)
Gene ID: Rep_2871_c_0_12
Type: pfam
Location: 17288 - 18475 (+)
Type: pfam
Location: 17288 - 18475 (+)
Gene ID: Rep_2871_c_0_13
Type: CAZyme
Location: 18508 - 20349 (+)
Type: CAZyme
Location: 18508 - 20349 (+)
Gene ID: Rep_2871_c_0_14
Type: CAZyme
Location: 20381 - 21310 (-)
Type: CAZyme
Location: 20381 - 21310 (-)
Gene ID: Rep_2871_c_0_15
Type: TC
Location: 21472 - 22317 (+)
Type: TC
Location: 21472 - 22317 (+)
Gene ID: Rep_2871_c_0_16
Type: TC
Location: 22330 - 23097 (+)
Type: TC
Location: 22330 - 23097 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900760325
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2871_c_0_11 | vegan > omnivore | 10.31430 | 0.01057 |
| Rep_2871_c_0_12 | vegan > omnivore | 18.33041 | 0.01057 |
| Rep_2871_c_0_13 | vegan > omnivore | 18.14946 | 0.01057 |
| Rep_2871_c_0_13 | vegetarian > omnivore | 13.08045 | 0.02011 |
| Rep_2871_c_0_14 | vegan > omnivore | 1.44225 | 0.01057 |
| Rep_2871_c_0_15 | vegan > omnivore | 1.88139 | 0.01057 |