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Cluster: Rep_2864_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2864_c_46 Rep_2864_c_46_23 25420 26589 - CE9
STP Rep_2864_c_46 Rep_2864_c_46_24 26707 27873 - SIS | SIS
TF Rep_2864_c_46 Rep_2864_c_46_25 27988 28719 - GntR
TC Rep_2864_c_46 Rep_2864_c_46_26 28904 29986 - 4.A.6.1.4
TC Rep_2864_c_46 Rep_2864_c_46_27 29976 30776 - 4.A.6.1.4
TC Rep_2864_c_46 Rep_2864_c_46_28 30864 31346 - 4.A.6.1.4
pfam Rep_2864_c_46 Rep_2864_c_46_29 31383 31664 - YajC
TC Rep_2864_c_46 Rep_2864_c_46_30 31664 32107 - 4.A.6.1.16
Gene ID: Rep_2864_c_46_23
Type: CAZyme
Location: 25420 - 26589 (-)
Gene ID: Rep_2864_c_46_24
Type: STP
Location: 26707 - 27873 (-)
Gene ID: Rep_2864_c_46_25
Type: TF
Location: 27988 - 28719 (-)
Gene ID: Rep_2864_c_46_26
Type: TC
Location: 28904 - 29986 (-)
Gene ID: Rep_2864_c_46_27
Type: TC
Location: 29976 - 30776 (-)
Gene ID: Rep_2864_c_46_28
Type: TC
Location: 30864 - 31346 (-)
Gene ID: Rep_2864_c_46_29
Type: pfam
Location: 31383 - 31664 (-)
Gene ID: Rep_2864_c_46_30
Type: TC
Location: 31664 - 32107 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2864_c_46_29 vegan > omnivore 1.07205 0.00701

🧭 Explore Read Mapping of CGC

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