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Cluster: Rep_2864_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2864_c_46 Rep_2864_c_46_2 1538 2980 + GH1
TC Rep_2864_c_46 Rep_2864_c_46_3 3157 4917 + 4.A.3.1.1
TF Rep_2864_c_46 Rep_2864_c_46_4 5170 6171 - LacI
TC Rep_2864_c_46 Rep_2864_c_46_5 6456 8234 + 4.A.3.1.1
CAZyme Rep_2864_c_46 Rep_2864_c_46_6 8311 9732 + GH1
pfam Rep_2864_c_46 Rep_2864_c_46_7 10099 11331 + Fic
STP Rep_2864_c_46 Rep_2864_c_46_8 11456 11710 - DeoRC
TC Rep_2864_c_46 Rep_2864_c_46_9 11873 13567 - 4.A.3.1.1
Gene ID: Rep_2864_c_46_2
Type: CAZyme
Location: 1538 - 2980 (+)
Gene ID: Rep_2864_c_46_3
Type: TC
Location: 3157 - 4917 (+)
Gene ID: Rep_2864_c_46_4
Type: TF
Location: 5170 - 6171 (-)
Gene ID: Rep_2864_c_46_5
Type: TC
Location: 6456 - 8234 (+)
Gene ID: Rep_2864_c_46_6
Type: CAZyme
Location: 8311 - 9732 (+)
Gene ID: Rep_2864_c_46_7
Type: pfam
Location: 10099 - 11331 (+)
Gene ID: Rep_2864_c_46_8
Type: STP
Location: 11456 - 11710 (-)
Gene ID: Rep_2864_c_46_9
Type: TC
Location: 11873 - 13567 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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