Cluster: Rep_2864_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2864
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2864_c_34 | Rep_2864_c_34_3 | 2058 | 2570 | + | 4.A.1.2.5 |
| pfam | Rep_2864_c_34 | Rep_2864_c_34_4 | 2577 | 3443 | + | PRD | PRD | CAT_RBD |
| TC | Rep_2864_c_34 | Rep_2864_c_34_5 | 3543 | 5159 | + | 4.A.1.1.3 |
| CAZyme | Rep_2864_c_34 | Rep_2864_c_34_6 | 5163 | 6545 | + | GH4 |
Gene ID: Rep_2864_c_34_3
Type: TC
Location: 2058 - 2570 (+)
Type: TC
Location: 2058 - 2570 (+)
Gene ID: Rep_2864_c_34_4
Type: pfam
Location: 2577 - 3443 (+)
Type: pfam
Location: 2577 - 3443 (+)
Gene ID: Rep_2864_c_34_5
Type: TC
Location: 3543 - 5159 (+)
Type: TC
Location: 3543 - 5159 (+)
Gene ID: Rep_2864_c_34_6
Type: CAZyme
Location: 5163 - 6545 (+)
Type: CAZyme
Location: 5163 - 6545 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900762015
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.