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Cluster: Rep_2864_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2864_c_28 Rep_2864_c_28_24 27249 28649 + GH1
TC Rep_2864_c_28 Rep_2864_c_28_25 28770 30113 + 4.A.3.2.9
TC Rep_2864_c_28 Rep_2864_c_28_26 30274 30576 + 4.A.3.2.9
TC Rep_2864_c_28 Rep_2864_c_28_27 30586 30918 + 4.A.3.2.3
STP Rep_2864_c_28 Rep_2864_c_28_28 31160 32113 + Glucokinase
pfam Rep_2864_c_28 Rep_2864_c_28_29 32282 33205 + DHH | DHHA2
TC Rep_2864_c_28 Rep_2864_c_28_30 33473 34831 + 2.A.33.1.1
Gene ID: Rep_2864_c_28_24
Type: CAZyme
Location: 27249 - 28649 (+)
Gene ID: Rep_2864_c_28_25
Type: TC
Location: 28770 - 30113 (+)
Gene ID: Rep_2864_c_28_26
Type: TC
Location: 30274 - 30576 (+)
Gene ID: Rep_2864_c_28_27
Type: TC
Location: 30586 - 30918 (+)
Gene ID: Rep_2864_c_28_28
Type: STP
Location: 31160 - 32113 (+)
Gene ID: Rep_2864_c_28_29
Type: pfam
Location: 32282 - 33205 (+)
Gene ID: Rep_2864_c_28_30
Type: TC
Location: 33473 - 34831 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2864_c_28_26 vegan > omnivore 1.02659 0.00701

🧭 Explore Read Mapping of CGC

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