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Cluster: Rep_2862_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2862_c_10 Rep_2862_c_10_20 23643 24569 - CE7
TC Rep_2862_c_10 Rep_2862_c_10_21 24701 25528 - 3.A.1.5.27
TC Rep_2862_c_10 Rep_2862_c_10_22 25529 27544 - 3.A.1.5.25
TC Rep_2862_c_10 Rep_2862_c_10_23 27548 28504 - 3.A.1.5.38
TC Rep_2862_c_10 Rep_2862_c_10_24 28662 30275 - 3.A.1.5.27
pfam Rep_2862_c_10 Rep_2862_c_10_25 30641 32581 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC Rep_2862_c_10 Rep_2862_c_10_26 32588 34891 - 2.A.66.4.4
pfam Rep_2862_c_10 Rep_2862_c_10_27 34895 35395 - tRNA_edit
pfam Rep_2862_c_10 Rep_2862_c_10_28 35529 38408 - UvrA_DNA-bind | UvrA_inter
TC Rep_2862_c_10 Rep_2862_c_10_29 38668 39498 + 3.A.1.132.3
Gene ID: Rep_2862_c_10_20
Type: CAZyme
Location: 23643 - 24569 (-)
Gene ID: Rep_2862_c_10_21
Type: TC
Location: 24701 - 25528 (-)
Gene ID: Rep_2862_c_10_22
Type: TC
Location: 25529 - 27544 (-)
Gene ID: Rep_2862_c_10_23
Type: TC
Location: 27548 - 28504 (-)
Gene ID: Rep_2862_c_10_24
Type: TC
Location: 28662 - 30275 (-)
Gene ID: Rep_2862_c_10_25
Type: pfam
Location: 30641 - 32581 (-)
Gene ID: Rep_2862_c_10_26
Type: TC
Location: 32588 - 34891 (-)
Gene ID: Rep_2862_c_10_27
Type: pfam
Location: 34895 - 35395 (-)
Gene ID: Rep_2862_c_10_28
Type: pfam
Location: 35529 - 38408 (-)
Gene ID: Rep_2862_c_10_29
Type: TC
Location: 38668 - 39498 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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