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Cluster: Rep_2862_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2862_c_27 Rep_2862_c_27_5 3566 4735 - CE9
STP Rep_2862_c_27 Rep_2862_c_27_6 4854 6020 - SIS | SIS
TF Rep_2862_c_27 Rep_2862_c_27_7 6135 6866 - GntR
TC Rep_2862_c_27 Rep_2862_c_27_8 7051 8133 - 4.A.6.1.4
TC Rep_2862_c_27 Rep_2862_c_27_9 8123 8923 - 4.A.6.1.4
TC Rep_2862_c_27 Rep_2862_c_27_10 9014 9496 - 4.A.6.1.4
pfam Rep_2862_c_27 Rep_2862_c_27_11 9533 9814 - YajC
TC Rep_2862_c_27 Rep_2862_c_27_12 9814 10257 - 4.A.6.1.16
Gene ID: Rep_2862_c_27_5
Type: CAZyme
Location: 3566 - 4735 (-)
Gene ID: Rep_2862_c_27_6
Type: STP
Location: 4854 - 6020 (-)
Gene ID: Rep_2862_c_27_7
Type: TF
Location: 6135 - 6866 (-)
Gene ID: Rep_2862_c_27_8
Type: TC
Location: 7051 - 8133 (-)
Gene ID: Rep_2862_c_27_9
Type: TC
Location: 8123 - 8923 (-)
Gene ID: Rep_2862_c_27_10
Type: TC
Location: 9014 - 9496 (-)
Gene ID: Rep_2862_c_27_11
Type: pfam
Location: 9533 - 9814 (-)
Gene ID: Rep_2862_c_27_12
Type: TC
Location: 9814 - 10257 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2862_c_27_11 vegan > omnivore 1.02937 0.01057

🧭 Explore Read Mapping of CGC

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