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Cluster: Rep_2858_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2858_c_0 Rep_2858_c_0_28 31749 32918 - CE9
STP Rep_2858_c_0 Rep_2858_c_0_29 33037 34203 - SIS | SIS
TF Rep_2858_c_0 Rep_2858_c_0_30 34318 35049 - GntR
TC Rep_2858_c_0 Rep_2858_c_0_31 35235 36317 - 4.A.6.1.4
TC Rep_2858_c_0 Rep_2858_c_0_32 36307 37107 - 4.A.6.1.4
TC Rep_2858_c_0 Rep_2858_c_0_33 37198 37680 - 4.A.6.1.4
pfam Rep_2858_c_0 Rep_2858_c_0_34 37717 37998 - YajC
TC Rep_2858_c_0 Rep_2858_c_0_35 37998 38441 - 4.A.6.1.16
Gene ID: Rep_2858_c_0_28
Type: CAZyme
Location: 31749 - 32918 (-)
Gene ID: Rep_2858_c_0_29
Type: STP
Location: 33037 - 34203 (-)
Gene ID: Rep_2858_c_0_30
Type: TF
Location: 34318 - 35049 (-)
Gene ID: Rep_2858_c_0_31
Type: TC
Location: 35235 - 36317 (-)
Gene ID: Rep_2858_c_0_32
Type: TC
Location: 36307 - 37107 (-)
Gene ID: Rep_2858_c_0_33
Type: TC
Location: 37198 - 37680 (-)
Gene ID: Rep_2858_c_0_34
Type: pfam
Location: 37717 - 37998 (-)
Gene ID: Rep_2858_c_0_35
Type: TC
Location: 37998 - 38441 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2858_c_0_34 vegan > omnivore 1.00263 0.00863

🧭 Explore Read Mapping of CGC

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