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Cluster: Rep_2858_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2858_c_41 Rep_2858_c_41_2 855 1622 - 1.A.23.4.10
TC Rep_2858_c_41 Rep_2858_c_41_3 1884 2678 - 3.A.1.34.1
TC Rep_2858_c_41 Rep_2858_c_41_4 2671 3594 - 3.A.1.34.1
TC Rep_2858_c_41 Rep_2858_c_41_5 3799 4779 - 3.A.1.34.1
NULL(UNKNOWN) Rep_2858_c_41 Rep_2858_c_41_6 4940 5725 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_2858_c_41 Rep_2858_c_41_7 5983 7386 - tRNA-synt_2 | tRNA_anti-codon
TC Rep_2858_c_41 Rep_2858_c_41_8 7568 8131 - 4.A.1.2.6
peptidase Rep_2858_c_41 Rep_2858_c_41_9 8376 9275 + S09.UPW
NULL(UNKNOWN) Rep_2858_c_41 Rep_2858_c_41_10 9323 9643 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2858_c_41 Rep_2858_c_41_11 9765 12125 + 9.A.8.1.6
TC Rep_2858_c_41 Rep_2858_c_41_12 12247 13443 + 2.A.1.2.18
CAZyme Rep_2858_c_41 Rep_2858_c_41_13 13597 14973 + GH13_20
Gene ID: Rep_2858_c_41_2
Type: TC
Location: 855 - 1622 (-)
Gene ID: Rep_2858_c_41_3
Type: TC
Location: 1884 - 2678 (-)
Gene ID: Rep_2858_c_41_4
Type: TC
Location: 2671 - 3594 (-)
Gene ID: Rep_2858_c_41_5
Type: TC
Location: 3799 - 4779 (-)
Gene ID: Rep_2858_c_41_6
Type:
Location: 4940 - 5725 (-)
Gene ID: Rep_2858_c_41_7
Type: pfam
Location: 5983 - 7386 (-)
Gene ID: Rep_2858_c_41_8
Type: TC
Location: 7568 - 8131 (-)
Gene ID: Rep_2858_c_41_9
Type: peptidase
Location: 8376 - 9275 (+)
Gene ID: Rep_2858_c_41_10
Type:
Location: 9323 - 9643 (+)
Gene ID: Rep_2858_c_41_11
Type: TC
Location: 9765 - 12125 (+)
Gene ID: Rep_2858_c_41_12
Type: TC
Location: 12247 - 13443 (+)
Gene ID: Rep_2858_c_41_13
Type: CAZyme
Location: 13597 - 14973 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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