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Cluster: Rep_2858_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2858_c_0 Rep_2858_c_0_4 2707 3045 - 4.A.3.1.2
TF Rep_2858_c_0 Rep_2858_c_0_5 3260 4264 - LacI
TC Rep_2858_c_0 Rep_2858_c_0_6 4622 6397 + 4.A.3.1.1
CAZyme Rep_2858_c_0 Rep_2858_c_0_7 6464 7903 + GH1
TF Rep_2858_c_0 Rep_2858_c_0_8 8181 9218 - LacI
CAZyme Rep_2858_c_0 Rep_2858_c_0_9 9560 11002 + GH1
TC Rep_2858_c_0 Rep_2858_c_0_10 11180 12940 + 4.A.3.1.1
TF Rep_2858_c_0 Rep_2858_c_0_11 13199 14209 - LacI
TC Rep_2858_c_0 Rep_2858_c_0_12 14485 16242 + 4.A.3.1.1
CAZyme Rep_2858_c_0 Rep_2858_c_0_13 16318 17739 + GH1
pfam Rep_2858_c_0 Rep_2858_c_0_14 18105 19337 + Fic
STP Rep_2858_c_0 Rep_2858_c_0_15 19445 19840 - DeoRC
TC Rep_2858_c_0 Rep_2858_c_0_16 20003 21697 - 4.A.3.1.1
Gene ID: Rep_2858_c_0_4
Type: TC
Location: 2707 - 3045 (-)
Gene ID: Rep_2858_c_0_5
Type: TF
Location: 3260 - 4264 (-)
Gene ID: Rep_2858_c_0_6
Type: TC
Location: 4622 - 6397 (+)
Gene ID: Rep_2858_c_0_7
Type: CAZyme
Location: 6464 - 7903 (+)
Gene ID: Rep_2858_c_0_8
Type: TF
Location: 8181 - 9218 (-)
Gene ID: Rep_2858_c_0_9
Type: CAZyme
Location: 9560 - 11002 (+)
Gene ID: Rep_2858_c_0_10
Type: TC
Location: 11180 - 12940 (+)
Gene ID: Rep_2858_c_0_11
Type: TF
Location: 13199 - 14209 (-)
Gene ID: Rep_2858_c_0_12
Type: TC
Location: 14485 - 16242 (+)
Gene ID: Rep_2858_c_0_13
Type: CAZyme
Location: 16318 - 17739 (+)
Gene ID: Rep_2858_c_0_14
Type: pfam
Location: 18105 - 19337 (+)
Gene ID: Rep_2858_c_0_15
Type: STP
Location: 19445 - 19840 (-)
Gene ID: Rep_2858_c_0_16
Type: TC
Location: 20003 - 21697 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2858_c_0_8 vegetarian > omnivore 1.02795 0.03181

🧭 Explore Read Mapping of CGC

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