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Cluster: Rep_2846_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2846_c_17 Rep_2846_c_17_6 7953 9458 + GH77
CAZyme Rep_2846_c_17 Rep_2846_c_17_7 9587 11854 + GT35
TC Rep_2846_c_17 Rep_2846_c_17_8 12391 13590 - 3.A.1.1.22
TC Rep_2846_c_17 Rep_2846_c_17_9 13659 14498 - 3.A.1.1.45
TC Rep_2846_c_17 Rep_2846_c_17_10 14498 15352 - 3.A.1.1.45
TC Rep_2846_c_17 Rep_2846_c_17_11 15440 16756 - 3.A.1.1.45
TF Rep_2846_c_17 Rep_2846_c_17_12 17063 17782 - GntR
TC Rep_2846_c_17 Rep_2846_c_17_13 18007 20457 + 4.A.1.1.8
Gene ID: Rep_2846_c_17_6
Type: CAZyme
Location: 7953 - 9458 (+)
Gene ID: Rep_2846_c_17_7
Type: CAZyme
Location: 9587 - 11854 (+)
Gene ID: Rep_2846_c_17_8
Type: TC
Location: 12391 - 13590 (-)
Gene ID: Rep_2846_c_17_9
Type: TC
Location: 13659 - 14498 (-)
Gene ID: Rep_2846_c_17_10
Type: TC
Location: 14498 - 15352 (-)
Gene ID: Rep_2846_c_17_11
Type: TC
Location: 15440 - 16756 (-)
Gene ID: Rep_2846_c_17_12
Type: TF
Location: 17063 - 17782 (-)
Gene ID: Rep_2846_c_17_13
Type: TC
Location: 18007 - 20457 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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