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Cluster: Rep_2846_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2846_c_28 Rep_2846_c_28_75 84742 86163 - GH1
TC Rep_2846_c_28 Rep_2846_c_28_76 86239 88017 - 4.A.3.1.1
TF Rep_2846_c_28 Rep_2846_c_28_77 88294 89304 + LacI
TC Rep_2846_c_28 Rep_2846_c_28_78 89638 91398 - 4.A.3.1.1
CAZyme Rep_2846_c_28 Rep_2846_c_28_79 91575 93017 - GH1
TF Rep_2846_c_28 Rep_2846_c_28_80 93359 94396 + LacI
CAZyme Rep_2846_c_28 Rep_2846_c_28_81 94663 96102 - GH1
TC Rep_2846_c_28 Rep_2846_c_28_82 96169 97944 - 4.A.3.1.1
TF Rep_2846_c_28 Rep_2846_c_28_83 98271 99305 + LacI
TC Rep_2846_c_28 Rep_2846_c_28_84 99527 99865 + 4.A.3.1.2
Gene ID: Rep_2846_c_28_75
Type: CAZyme
Location: 84742 - 86163 (-)
Gene ID: Rep_2846_c_28_76
Type: TC
Location: 86239 - 88017 (-)
Gene ID: Rep_2846_c_28_77
Type: TF
Location: 88294 - 89304 (+)
Gene ID: Rep_2846_c_28_78
Type: TC
Location: 89638 - 91398 (-)
Gene ID: Rep_2846_c_28_79
Type: CAZyme
Location: 91575 - 93017 (-)
Gene ID: Rep_2846_c_28_80
Type: TF
Location: 93359 - 94396 (+)
Gene ID: Rep_2846_c_28_81
Type: CAZyme
Location: 94663 - 96102 (-)
Gene ID: Rep_2846_c_28_82
Type: TC
Location: 96169 - 97944 (-)
Gene ID: Rep_2846_c_28_83
Type: TF
Location: 98271 - 99305 (+)
Gene ID: Rep_2846_c_28_84
Type: TC
Location: 99527 - 99865 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2846_c_28_80 vegetarian > omnivore 1.02647 0.02242

🧭 Explore Read Mapping of CGC

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