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Cluster: Rep_2846_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2846_c_28 Rep_2846_c_28_59 69199 69642 + 4.A.6.1.16
pfam Rep_2846_c_28 Rep_2846_c_28_60 69642 69923 + YajC
TC Rep_2846_c_28 Rep_2846_c_28_61 69960 70442 + 4.A.6.1.4
TC Rep_2846_c_28 Rep_2846_c_28_62 70533 71333 + 4.A.6.1.4
TC Rep_2846_c_28 Rep_2846_c_28_63 71323 72405 + 4.A.6.1.4
TF Rep_2846_c_28 Rep_2846_c_28_64 72591 73322 + GntR
STP Rep_2846_c_28 Rep_2846_c_28_65 73437 74603 + SIS | SIS
CAZyme Rep_2846_c_28 Rep_2846_c_28_66 74721 75890 + CE9
Gene ID: Rep_2846_c_28_59
Type: TC
Location: 69199 - 69642 (+)
Gene ID: Rep_2846_c_28_60
Type: pfam
Location: 69642 - 69923 (+)
Gene ID: Rep_2846_c_28_61
Type: TC
Location: 69960 - 70442 (+)
Gene ID: Rep_2846_c_28_62
Type: TC
Location: 70533 - 71333 (+)
Gene ID: Rep_2846_c_28_63
Type: TC
Location: 71323 - 72405 (+)
Gene ID: Rep_2846_c_28_64
Type: TF
Location: 72591 - 73322 (+)
Gene ID: Rep_2846_c_28_65
Type: STP
Location: 73437 - 74603 (+)
Gene ID: Rep_2846_c_28_66
Type: CAZyme
Location: 74721 - 75890 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2846_c_28_60 vegan > omnivore 1.02710 0.00566

🧭 Explore Read Mapping of CGC

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