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Cluster: Rep_2846_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2846_c_24 Rep_2846_c_24_6 6890 7720 - 3.A.1.132.3
pfam Rep_2846_c_24 Rep_2846_c_24_7 7980 10859 + UvrA_DNA-bind | UvrA_inter
pfam Rep_2846_c_24 Rep_2846_c_24_8 10993 11493 + tRNA_edit
TC Rep_2846_c_24 Rep_2846_c_24_9 11497 13800 + 2.A.66.4.4
pfam Rep_2846_c_24 Rep_2846_c_24_10 13807 15747 + GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC Rep_2846_c_24 Rep_2846_c_24_11 16113 17726 + 3.A.1.5.27
TC Rep_2846_c_24 Rep_2846_c_24_12 17884 18840 + 3.A.1.5.38
TC Rep_2846_c_24 Rep_2846_c_24_13 18844 20859 + 3.A.1.5.25
TC Rep_2846_c_24 Rep_2846_c_24_14 20860 21687 + 3.A.1.5.27
CAZyme Rep_2846_c_24 Rep_2846_c_24_15 21819 22745 + CE7
Gene ID: Rep_2846_c_24_6
Type: TC
Location: 6890 - 7720 (-)
Gene ID: Rep_2846_c_24_7
Type: pfam
Location: 7980 - 10859 (+)
Gene ID: Rep_2846_c_24_8
Type: pfam
Location: 10993 - 11493 (+)
Gene ID: Rep_2846_c_24_9
Type: TC
Location: 11497 - 13800 (+)
Gene ID: Rep_2846_c_24_10
Type: pfam
Location: 13807 - 15747 (+)
Gene ID: Rep_2846_c_24_11
Type: TC
Location: 16113 - 17726 (+)
Gene ID: Rep_2846_c_24_12
Type: TC
Location: 17884 - 18840 (+)
Gene ID: Rep_2846_c_24_13
Type: TC
Location: 18844 - 20859 (+)
Gene ID: Rep_2846_c_24_14
Type: TC
Location: 20860 - 21687 (+)
Gene ID: Rep_2846_c_24_15
Type: CAZyme
Location: 21819 - 22745 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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