Cluster: Rep_2846_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2846
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2846_c_22 | Rep_2846_c_22_16 | 19963 | 22845 | + | 3.D.1.4.2 |
| TC | Rep_2846_c_22 | Rep_2846_c_22_17 | 22858 | 23436 | + | 3.D.1.4.2 |
| pfam | Rep_2846_c_22 | Rep_2846_c_22_18 | 23436 | 24137 | + | Complex1_30kDa |
| TC | Rep_2846_c_22 | Rep_2846_c_22_19 | 24143 | 25231 | + | 3.D.1.4.2 |
| STP | Rep_2846_c_22 | Rep_2846_c_22_20 | 25239 | 25580 | + | Fer4 |
| NULL(UNKNOWN) | Rep_2846_c_22 | Rep_2846_c_22_21 | 25776 | 26051 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2846_c_22 | Rep_2846_c_22_22 | 26438 | 31852 | + | CBM32 |
Gene ID: Rep_2846_c_22_16
Type: TC
Location: 19963 - 22845 (+)
Type: TC
Location: 19963 - 22845 (+)
Gene ID: Rep_2846_c_22_17
Type: TC
Location: 22858 - 23436 (+)
Type: TC
Location: 22858 - 23436 (+)
Gene ID: Rep_2846_c_22_18
Type: pfam
Location: 23436 - 24137 (+)
Type: pfam
Location: 23436 - 24137 (+)
Gene ID: Rep_2846_c_22_19
Type: TC
Location: 24143 - 25231 (+)
Type: TC
Location: 24143 - 25231 (+)
Gene ID: Rep_2846_c_22_20
Type: STP
Location: 25239 - 25580 (+)
Type: STP
Location: 25239 - 25580 (+)
Gene ID: Rep_2846_c_22_21
Type:
Location: 25776 - 26051 (-)
Type:
Location: 25776 - 26051 (-)
Gene ID: Rep_2846_c_22_22
Type: CAZyme
Location: 26438 - 31852 (+)
Type: CAZyme
Location: 26438 - 31852 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900757495
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.