Cluster: Rep_2845_CGC9
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_2845
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2845_c_22 | Rep_2845_c_22_4 | 2951 | 4954 | - | GT2 |
| CAZyme | Rep_2845_c_22 | Rep_2845_c_22_5 | 5187 | 6323 | + | GT2 |
| TC | Rep_2845_c_22 | Rep_2845_c_22_6 | 6480 | 7292 | + | 3.A.1.103.4 |
| TC | Rep_2845_c_22 | Rep_2845_c_22_7 | 7302 | 8057 | + | 3.A.1.103.1 |
| CAZyme | Rep_2845_c_22 | Rep_2845_c_22_8 | 8059 | 9315 | + | GT2 |
| CAZyme | Rep_2845_c_22 | Rep_2845_c_22_9 | 9355 | 10416 | + | GT2 |
| CAZyme | Rep_2845_c_22 | Rep_2845_c_22_10 | 10438 | 11673 | + | GT4 |
| pfam | Rep_2845_c_22 | Rep_2845_c_22_11 | 11730 | 12383 | + | IU_nuc_hydro |
| CAZyme | Rep_2845_c_22 | Rep_2845_c_22_12 | 12282 | 13244 | - | GT81 |
| TC | Rep_2845_c_22 | Rep_2845_c_22_13 | 13367 | 14209 | + | 3.A.1.103.5 |
Gene ID: Rep_2845_c_22_4
Type: CAZyme
Location: 2951 - 4954 (-)
Type: CAZyme
Location: 2951 - 4954 (-)
Gene ID: Rep_2845_c_22_5
Type: CAZyme
Location: 5187 - 6323 (+)
Type: CAZyme
Location: 5187 - 6323 (+)
Gene ID: Rep_2845_c_22_6
Type: TC
Location: 6480 - 7292 (+)
Type: TC
Location: 6480 - 7292 (+)
Gene ID: Rep_2845_c_22_7
Type: TC
Location: 7302 - 8057 (+)
Type: TC
Location: 7302 - 8057 (+)
Gene ID: Rep_2845_c_22_8
Type: CAZyme
Location: 8059 - 9315 (+)
Type: CAZyme
Location: 8059 - 9315 (+)
Gene ID: Rep_2845_c_22_9
Type: CAZyme
Location: 9355 - 10416 (+)
Type: CAZyme
Location: 9355 - 10416 (+)
Gene ID: Rep_2845_c_22_10
Type: CAZyme
Location: 10438 - 11673 (+)
Type: CAZyme
Location: 10438 - 11673 (+)
Gene ID: Rep_2845_c_22_11
Type: pfam
Location: 11730 - 12383 (+)
Type: pfam
Location: 11730 - 12383 (+)
Gene ID: Rep_2845_c_22_12
Type: CAZyme
Location: 12282 - 13244 (-)
Type: CAZyme
Location: 12282 - 13244 (-)
Gene ID: Rep_2845_c_22_13
Type: TC
Location: 13367 - 14209 (+)
Type: TC
Location: 13367 - 14209 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900554155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2845_c_22_5 | vegetarian > vegan | 2.35664 | 0.02423 |
| Rep_2845_c_22_6 | vegetarian > vegan | 2.65133 | 0.02423 |
| Rep_2845_c_22_9 | vegetarian > omnivore | 2.17602 | 0.02773 |
| Rep_2845_c_22_9 | vegetarian > vegan | 4.53216 | 0.02423 |
| Rep_2845_c_22_10 | vegetarian > omnivore | 1.76950 | 0.02773 |
| Rep_2845_c_22_10 | vegetarian > vegan | 3.88471 | 0.02423 |