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Cluster: Rep_2845_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2845_c_12 Rep_2845_c_12_14 15462 17912 - 4.A.1.1.8
NULL(UNKNOWN) Rep_2845_c_12 Rep_2845_c_12_15 17934 18053 + NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_2845_c_12 Rep_2845_c_12_16 18137 18856 + GntR
TC Rep_2845_c_12 Rep_2845_c_12_17 19163 20479 + 3.A.1.1.45
TC Rep_2845_c_12 Rep_2845_c_12_18 20567 21421 + 3.A.1.1.45
TC Rep_2845_c_12 Rep_2845_c_12_19 21421 22260 + 3.A.1.1.45
TC Rep_2845_c_12 Rep_2845_c_12_20 22329 23528 + 3.A.1.1.22
CAZyme Rep_2845_c_12 Rep_2845_c_12_21 23983 26250 - GT35
CAZyme Rep_2845_c_12 Rep_2845_c_12_22 26379 27884 - GH77
Gene ID: Rep_2845_c_12_14
Type: TC
Location: 15462 - 17912 (-)
Gene ID: Rep_2845_c_12_15
Type:
Location: 17934 - 18053 (+)
Gene ID: Rep_2845_c_12_16
Type: TF
Location: 18137 - 18856 (+)
Gene ID: Rep_2845_c_12_17
Type: TC
Location: 19163 - 20479 (+)
Gene ID: Rep_2845_c_12_18
Type: TC
Location: 20567 - 21421 (+)
Gene ID: Rep_2845_c_12_19
Type: TC
Location: 21421 - 22260 (+)
Gene ID: Rep_2845_c_12_20
Type: TC
Location: 22329 - 23528 (+)
Gene ID: Rep_2845_c_12_21
Type: CAZyme
Location: 23983 - 26250 (-)
Gene ID: Rep_2845_c_12_22
Type: CAZyme
Location: 26379 - 27884 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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