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Cluster: Rep_2845_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2845_c_11 Rep_2845_c_11_6 4560 5003 + 4.A.6.1.16
pfam Rep_2845_c_11 Rep_2845_c_11_7 5003 5284 + YajC
TC Rep_2845_c_11 Rep_2845_c_11_8 5321 5803 + 4.A.6.1.4
TC Rep_2845_c_11 Rep_2845_c_11_9 5894 6694 + 4.A.6.1.4
TC Rep_2845_c_11 Rep_2845_c_11_10 6684 7766 + 4.A.6.1.4
TF Rep_2845_c_11 Rep_2845_c_11_11 7952 8683 + GntR
STP Rep_2845_c_11 Rep_2845_c_11_12 8798 9964 + SIS | SIS
CAZyme Rep_2845_c_11 Rep_2845_c_11_13 10084 11253 + CE9
Gene ID: Rep_2845_c_11_6
Type: TC
Location: 4560 - 5003 (+)
Gene ID: Rep_2845_c_11_7
Type: pfam
Location: 5003 - 5284 (+)
Gene ID: Rep_2845_c_11_8
Type: TC
Location: 5321 - 5803 (+)
Gene ID: Rep_2845_c_11_9
Type: TC
Location: 5894 - 6694 (+)
Gene ID: Rep_2845_c_11_10
Type: TC
Location: 6684 - 7766 (+)
Gene ID: Rep_2845_c_11_11
Type: TF
Location: 7952 - 8683 (+)
Gene ID: Rep_2845_c_11_12
Type: STP
Location: 8798 - 9964 (+)
Gene ID: Rep_2845_c_11_13
Type: CAZyme
Location: 10084 - 11253 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2845_c_11_7 vegan > omnivore 1.16904 0.00566

🧭 Explore Read Mapping of CGC

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