Cluster: Rep_2845_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2845
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2845_c_28 | Rep_2845_c_28_10 | 10806 | 17219 | - | GH31_18 |
| TF | Rep_2845_c_28 | Rep_2845_c_28_11 | 17735 | 18175 | - | MarR |
| NULL(UNKNOWN) | Rep_2845_c_28 | Rep_2845_c_28_12 | 18280 | 18606 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2845_c_28 | Rep_2845_c_28_13 | 18802 | 19629 | - | 4.A.6.1.6 |
| TC | Rep_2845_c_28 | Rep_2845_c_28_14 | 19629 | 20486 | - | 4.A.6.1.1 |
| TC | Rep_2845_c_28 | Rep_2845_c_28_15 | 20559 | 21047 | - | 4.A.6.1.9 |
Gene ID: Rep_2845_c_28_10
Type: CAZyme
Location: 10806 - 17219 (-)
Type: CAZyme
Location: 10806 - 17219 (-)
Gene ID: Rep_2845_c_28_11
Type: TF
Location: 17735 - 18175 (-)
Type: TF
Location: 17735 - 18175 (-)
Gene ID: Rep_2845_c_28_12
Type:
Location: 18280 - 18606 (-)
Type:
Location: 18280 - 18606 (-)
Gene ID: Rep_2845_c_28_13
Type: TC
Location: 18802 - 19629 (-)
Type: TC
Location: 18802 - 19629 (-)
Gene ID: Rep_2845_c_28_14
Type: TC
Location: 19629 - 20486 (-)
Type: TC
Location: 19629 - 20486 (-)
Gene ID: Rep_2845_c_28_15
Type: TC
Location: 20559 - 21047 (-)
Type: TC
Location: 20559 - 21047 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900554155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2845_c_28_10 | vegetarian > omnivore | 1.35212 | 0.02773 |
| Rep_2845_c_28_10 | vegetarian > vegan | 2.06413 | 0.01195 |