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Cluster: Rep_2843_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2843_c_68 Rep_2843_c_68_1 316 759 + 4.A.6.1.16
pfam Rep_2843_c_68 Rep_2843_c_68_2 759 1040 + YajC
TC Rep_2843_c_68 Rep_2843_c_68_3 1077 1559 + 4.A.6.1.4
TC Rep_2843_c_68 Rep_2843_c_68_4 1647 2447 + 4.A.6.1.4
TC Rep_2843_c_68 Rep_2843_c_68_5 2437 3519 + 4.A.6.1.4
TF Rep_2843_c_68 Rep_2843_c_68_6 3704 4435 + GntR
STP Rep_2843_c_68 Rep_2843_c_68_7 4550 5716 + SIS | SIS
CAZyme Rep_2843_c_68 Rep_2843_c_68_8 5836 7005 + CE9
Gene ID: Rep_2843_c_68_1
Type: TC
Location: 316 - 759 (+)
Gene ID: Rep_2843_c_68_2
Type: pfam
Location: 759 - 1040 (+)
Gene ID: Rep_2843_c_68_3
Type: TC
Location: 1077 - 1559 (+)
Gene ID: Rep_2843_c_68_4
Type: TC
Location: 1647 - 2447 (+)
Gene ID: Rep_2843_c_68_5
Type: TC
Location: 2437 - 3519 (+)
Gene ID: Rep_2843_c_68_6
Type: TF
Location: 3704 - 4435 (+)
Gene ID: Rep_2843_c_68_7
Type: STP
Location: 4550 - 5716 (+)
Gene ID: Rep_2843_c_68_8
Type: CAZyme
Location: 5836 - 7005 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2843_c_68_2 vegan > omnivore 1.12336 0.00701

🧭 Explore Read Mapping of CGC

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