Cluster: Rep_2843_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2843
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2843_c_17 | Rep_2843_c_17_7 | 9708 | 11957 | + | 1.I.1.1.3 |
| STP | Rep_2843_c_17 | Rep_2843_c_17_8 | 12115 | 12876 | + | Fer4 |
| TC | Rep_2843_c_17 | Rep_2843_c_17_9 | 13220 | 13732 | + | 4.A.1.2.5 |
| pfam | Rep_2843_c_17 | Rep_2843_c_17_10 | 13739 | 14605 | + | PRD | PRD | CAT_RBD |
| TC | Rep_2843_c_17 | Rep_2843_c_17_11 | 14705 | 16321 | + | 4.A.1.1.3 |
| CAZyme | Rep_2843_c_17 | Rep_2843_c_17_12 | 16325 | 17707 | + | GH4 |
Gene ID: Rep_2843_c_17_7
Type: TC
Location: 9708 - 11957 (+)
Type: TC
Location: 9708 - 11957 (+)
Gene ID: Rep_2843_c_17_8
Type: STP
Location: 12115 - 12876 (+)
Type: STP
Location: 12115 - 12876 (+)
Gene ID: Rep_2843_c_17_9
Type: TC
Location: 13220 - 13732 (+)
Type: TC
Location: 13220 - 13732 (+)
Gene ID: Rep_2843_c_17_10
Type: pfam
Location: 13739 - 14605 (+)
Type: pfam
Location: 13739 - 14605 (+)
Gene ID: Rep_2843_c_17_11
Type: TC
Location: 14705 - 16321 (+)
Type: TC
Location: 14705 - 16321 (+)
Gene ID: Rep_2843_c_17_12
Type: CAZyme
Location: 16325 - 17707 (+)
Type: CAZyme
Location: 16325 - 17707 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902489295
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.